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Java Tree View - view interaction matrices or any software to generate and view heatmaps, needed to view standard analyzeHiC output Circos - software to generating Free pca training classes in High Peak interaction diagrams. Tips on installing Circos Needed when running analyzeHiC with " -circos Blackpool female backpage option R - statistical computing environment, used for PCA analysis no special packages needed, used by runHiCpca. Java Tree View is strictly for visualizing output files, as is Cytoscape.
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